YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57109914
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.97
Transmembrane Helix	41	61	0.95
Non-Cytoplasmic	62	96	0.94
Transmembrane Helix	97	116	0.92
Cytoplasmic	117	125	0.83
Transmembrane Helix	126	144	0.95
Non-Cytoplasmic	145	151	0.71
Transmembrane Helix	152	170	0.48
Cytoplasmic	171	171	0.28
Transmembrane Helix	172	196	0.67
Non-Cytoplasmic	197	198	0.30
Transmembrane Helix	199	228	0.70
Cytoplasmic	229	230	0.33
Transmembrane Helix	231	251	0.71
Non-Cytoplasmic	252	285	0.53
Transmembrane Helix	286	307	0.88
Cytoplasmic	308	332	0.63
Transmembrane Helix	333	356	0.62
Non-Cytoplasmic	357	361	0.47
Transmembrane Helix	362	389	0.57
Cytoplasmic	390	398	0.39
Transmembrane Helix	399	423	0.74
Non-Cytoplasmic	424	438	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGVRKRGR SGPATRAAGL CGQWLRRAWQ ERRLLLLEPR YTLLVAACLC LAEVGITFWV  60
   61 IHRVAYTEID WKAYMAQVEG VINGTYDYTQ LQGDTGPLVY PAGFVYIFMG LYYATGRGTD 120
  121 IRMAQHIFAV LYLATLLLVF LIYHQTCKVP PFVFFFMCCA SYRVHSIFVL RLFNDPVAMA 180
  181 LLFLSINLLL ARRWGWGCCC FSLAVSVKMN VLLFAPGLLF LLLTQFGFRG ALPKLGICAV 240
  241 LQVVLGLPFL LENPIGYLSR SFDLGRQFLF RWTVNWRFLP EALFLHRAFH VALLAAHLTL 300
  301 LFLFAFCKWH RTGESILSLL KDPSKRKVPP QPLTPNQIIS TLFTSNFIGI CFSRSLHYQF 360
  361 YVWYFHTLPY LLWATPARWL THLLRLLVLG LIELSWNTYP STSCSSAALH ICHAIILLQL 420
  421 WLGPQPFPKS VQHSKKAH