YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74003236
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWRGWAQRG WGCGPAWAQP AGGRGCEELT AALAPPRLLG RRFDFFIQQK CGFRKAPRKV  60
   61 EPRRSDTGTS GEAYKRSALI PPVEETVFYP SPYPIRTLVK PLFFTVGFTG CAFGSAAIWQ 120
  121 YESLKSRVQS YFDGIKADWL DSIRPQKEGD FRKEINKWWN NLSDGQRTVT GIIAANVFVF 180
  181 CLWRVPSLQR TMIRYFTSNP ASKVLCSPML LSTFSHFSLF HMAANMYVLW SFSSSIVNIL 240
  241 GQEQFMAVYL SAGVISNFVS YVCKVATGRY GPSLGASGAI MTVLAAVCTK IPEGRLAIIF 300
  301 LPMFTFTAGN ALKAIIAMDT AGMILGWKFF DHAAHLGGAL FGIWYITYGH ELIWKNREPL 360
  361 VKIWHEMRTN SPKKGGGSK

Type	Start	End	Confidence
Cytoplasmic	1	100	0.95
Transmembrane Helix	101	121	0.90
Non-Cytoplasmic	122	167	0.95
Transmembrane Helix	168	186	0.94
Cytoplasmic	187	203	0.87
Transmembrane Helix	204	224	0.82
Non-Cytoplasmic	225	267	0.54
Transmembrane Helix	268	289	0.67
Cytoplasmic	290	295	0.56
Transmembrane Helix	296	317	0.83
Non-Cytoplasmic	318	331	0.59
Transmembrane Helix	332	349	0.90
Cytoplasmic	350	379	0.70