YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74003078
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	376	0.77
Transmembrane Helix	377	411	0.59
Cytoplasmic	412	412	0.40
Transmembrane Helix	413	430	0.62
Non-Cytoplasmic	431	439	0.71
Transmembrane Helix	440	462	0.86
Cytoplasmic	463	588	0.98
Transmembrane Helix	589	611	0.89
Non-Cytoplasmic	612	631	0.92
Transmembrane Helix	632	654	0.89
Cytoplasmic	655	668	0.77
Transmembrane Helix	669	691	0.87
Non-Cytoplasmic	692	719	0.95
Transmembrane Helix	720	741	0.94
Cytoplasmic	742	778	0.94
Transmembrane Helix	779	798	0.97
Non-Cytoplasmic	799	818	0.88
Transmembrane Helix	819	839	0.86
Cytoplasmic	840	931	0.95
Transmembrane Helix	932	956	0.94
Non-Cytoplasmic	957	973	0.92
Transmembrane Helix	974	998	0.88
Cytoplasmic	999	1018	0.87
Transmembrane Helix	1019	1042	0.88
Non-Cytoplasmic	1043	1063	0.91
Transmembrane Helix	1064	1084	0.92
Cytoplasmic	1085	1104	0.93
Transmembrane Helix	1105	1127	0.87
Non-Cytoplasmic	1128	1147	0.79
Transmembrane Helix	1148	1166	0.96
Cytoplasmic	1167	1209	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKGVRRPA QRRAGRIRSG RSGRAVSGGR SDPQPGVCRR PSSGSPSRDP AALARVFFPY  60
   61 FLETCGRTPR GPSKHAHSWA LCRRAARAAG GAGRDAEPVL SPRGALSLPT PRQPGAGRPP 120
  121 AAGPGLCLFV RARGRSGARL PEVRMGDGRQ RCRLPDTQEP GFSVLCGVSA CVSDPVVWEQ 180
  181 VTLVNGAQKV QTPVSVEMRR LVRRSEDAFT PRLFAWECVF RAPRTEMVVV LREHPGVLPR 240
  241 RAVVRASTVM TFVRQFAERA HAAALGRRRS PSDPGGSCFQ GTKVLQVVVA GGYGSKVKLK 300
  301 DIALEDICRV CRSEGTPEKP LYHPCVCTGS IKFIHQECLV QWLKHSRKEY CELCKHRFAF 360
  361 TPIYSPDMPS RLPIQDIFAG LVTSIGTAIR YWFHYTLVAF AWLGVVPLTA CRIYKCLFTG 420
  421 SVSSLLTLPL DMLSTDNLLA DCLQGCFVVT CTLCAFISLV WLREQIVHGG APIWLEHAAP 480
  481 PFNAAGHHQN EAPAGGNGAE NVAPDQPANP PAENAVVGEN PDAQDEQAEE EEEDNEEEDD 540
  541 AGGEDAADAN NGAQDDMNWN ALEWDRAAEE LTWERMLGLD GSLVFLEHVF WVVSLNTLFI 600
  601 LVFAFCPYHI GHFSLVGLGF EEHVQASHFE GLITTIVGYI LLAITLIICH GLATLVKFHR 660
  661 SRRLLGVCYI VVKVSLLVVV EIGVFPLICG WWLDICSLEM FDATLKDREL SFQSAPGTTM 720
  721 FLHWLVGMVY VFYFASFILL LREVLRPGVL WFLRNLNDPD FNPVQEMIHL PIYRHLRRFI 780
  781 LSVIVFGSIV LLMLWLPIRI IKSLLPNFLP YNVMLYSDAP VSELSLELLL LQVVLPALLE 840
  841 QGHTRQWLKG LVRAWTVTAG YLLDLHSYLL GDQEENENSA NQQVNNNQHA RNNNAIPVVG 900
  901 EGLHAAHQAI LQQGGPVGFQ PYRRPLNFPL RIFLLIVFMC ITLLIASLIC LTLPVFAGRW 960
  961 LMSFWTGTAK IHELYTAACG LYVCWLTIRA VTVLVAWMPQ GRRVIFQKVK EWSLMIMKTL1020
 1021 IVAVLLAGVV PLLLGLLFEL VIVAPLRVPL DQTPLFYPWQ DWALGVLHAK IIAAITLMGP1080
 1081 QWWLKTVIEQ VYANGIRNID LHYIIRKLAA PVISVLLLSL CVPYVIASGV VPLLGVTAEM1140
 1141 QNLVHRRIYP FLLMVVVLMG ILSFQVRQFK RLYEHIKNDK YLVGQRLVNY ERKSGKQGTS1200
 1201 PPPPQSSQE