YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74002880
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVVPGQLPV TLRALPSTLW LGRTRQALAH VAQTWSTKGT GRLRTYFSEL QLPQGWFLSC  60
   61 GKKAQLSISH VLPTGTIPEI MRHHRVCCLE EKAATEASWP EPPQMMSLSP PTTRDQGDPG 120
  121 EAALGLQEGH HLSQQSCGRC SGQKWLHLQA HPEGHCAYHK YVDKRDCWPR MQGVAMSPVG 180
  181 HPFSTSANLT SSSKMPPLAA KKLSGGGACL SNNTLFKNQS LHTYWITSVP ASCLAKKQLA 240
  241 KMMPGGLTEA KPATPEVQEI ANETDWWPTT QSLNPVNVLS PMAKEIADVI ESKVKPQLEE 300
  301 KTNETYQEFE AVEYKTQVVA GINYYIKVRV GDNSYIHLKI FKGLPGQNPT LTLTGYQTDK 360
  361 SKDDELTGF

Type	Start	End	Confidence
Signal Peptide	1	29	0.52
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	369	0.99