YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74002146
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQQFALGVR TFCRKRCSPQ DLGWRRVAGG GGADSPEPGS APLLRSCCPT GCGGRDSWTP  60
   61 PADPPTPTPP TQRLRPAMEG AELAGKILST WLTLVLGLIL LPSAFGVSLG ISEIYMKILV 120
  121 KTLEWATIRI EKGVPKESVL KNSASVGIIQ RDESPMEKGL SGLRGRDFEL SDVFYFSKKG 180
  181 LEAIVEDEVT QRFSSEELVS WNLLTRTNIN FQYISLRLTM VWVLGVIVRY CVLLPLRVTL 240
  241 AFIGISLLVI GTTLVGQLPD GSLKNWLSEL VHLTCCRICV RALSGTIHYH NKQYRPQKGG 300
  301 ICVANHTSPI DVLILTTDGC YAMVGQVHGG LMGIIQRAMV KACPHVWFER SEMKDRHLVT 360
  361 KRLKEHIADK KKLPILIFPE GTCINNTSVM MFKKGSFEIG GTIHPVAIKY NPQFGDAFWN 420
  421 SSKYNMVSYL LRMMTSWAIV CDVWYMPPMS REEGEDAVQF ANRVKSAIAV QGGLTELPWD 480
  481 GGLKRAKVKD TFKEEQQKNY SKMIVGNGSL

Type	Start	End	Confidence
Cytoplasmic	1	86	0.87
Transmembrane Helix	87	109	0.83
Non-Cytoplasmic	110	212	0.86
Transmembrane Helix	213	233	0.85
Cytoplasmic	234	237	0.76
Transmembrane Helix	238	258	0.88
Non-Cytoplasmic	259	510	0.70