YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74001788
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAARCAALA GGLRVLARPW LRGFGALAQA RAAGSLGVGH PRPSVGPEPR RRRLGLSAAA  60
   61 VVNSAPRPLQ PYLRLMRLDK PIGTWLLYLP CTWSIGLAAE PGCFPDWYML SLFGTGAVLM 120
  121 RGAGCTINDM WDRDYDKKVI RTANRPIAAG DISTFQSFIF LGGQLTLALG ILLCLNYYSI 180
  181 ALGAASLLLV ITYPLMKRIT YWPQLALGLT FNWGALLGWS AIKGSCDLSI CLPLYFSGIM 240
  241 WTLIYDTIYA HQDKRDDALI GLKSTALRFQ ENTKQWLSGF GVAMLGALSL VGVNSGQTAP 300
  301 YYTALAAVGA HLAHQIYTLD IHRPEDCWDK FTSNRTLGLV VLLGIVLGNL WKEKKTDEAN 360
  361 KSIDRIEN

Type	Start	End	Confidence
Cytoplasmic	1	81	0.82
Transmembrane Helix	82	99	0.81
Non-Cytoplasmic	100	108	0.62
Transmembrane Helix	109	128	0.63
Cytoplasmic	129	146	0.58
Transmembrane Helix	147	172	0.63
Non-Cytoplasmic	173	173	0.37
Transmembrane Helix	174	193	0.84
Cytoplasmic	194	200	0.73
Transmembrane Helix	201	222	0.83
Non-Cytoplasmic	223	228	0.68
Transmembrane Helix	229	249	0.80
Cytoplasmic	250	275	0.84
Transmembrane Helix	276	293	0.90
Non-Cytoplasmic	294	330	0.57
Transmembrane Helix	331	351	0.62
Cytoplasmic	352	368	0.69