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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|74001211
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSNLEKCGL KSCINMSTDD EMMSPVKEAI DFFGSYRSLF LLVIIVTFTE SVKDYYKMAH  60
   61 TLATTLTTVT PSAALVLFPT DPEDLERGND NGTPIPTSDN DDNSLGYTGS RLRQEDFPPR 120
  121 IVEHPSDLIV SKGEPATLNC KAEGRPTPTI EWYKGGERVE TDKDDPRSHR MLLPSGSLFF 180
  181 LRIVHGRKSR PDEGVYVCVA RNYLGEAVSH NASLEVAILR DDFRQNPSDV MVAVGEPAVM 240
  241 ECQPPRGHPE PTISWKKDGS PLDDKDERIT IRGGKLMITY TRKSDAGKYV CVGTNMVGER 300
  301 ESEVAELTVL ERPSFVKRPS NLAVTVDDSA EFKCEARGDP VPTVRWRKDD GELPKSRYEI 360
  361 RDDHTLKIRK VMAGDMGSYT CVAENMVGKA EASATLTVQE PPHFVVKPRD QVVALGRTVT 420
  421 FQCEATGNPQ PAIFWRREGS QNLLFSYQPP QSTSRFSVSQ TGDLTITNVQ RSDVGYYICQ 480
  481 TLNVAGSIIT KAYLEVTDVI ADRPPPVIRQ GPVNQTVAVD GTLVLSCVAT GSPMPTILWR 540
  541 KDGVLVSTQD SRIKQLETGV LQIRYAKLGD TGRYTCIAST PSGEATWSAY IEVQEFGVPV 600
  601 QPPRPTDPNL IPSAPSKPEV TDVSRNTVTL SWQPNLNSGA TPTSYIIEAF SHASGSSWQT 660
  661 VAENVKTETF AIKGLKPNAI YLFLVRAANA YGISDPSQIS DPVKTQDVPP TSQGVDHKQV 720
  721 QRELGNVVLH LHNPTILSSS SIEVHWTVDQ QSQYIQGYKI LYRPSGGNHG ESEWLVFEVR 780
  781 TPTKNSVVIP DLKKGVNYEI KARPFFNEFQ GADSEIKFAK TLEEAPSAPP QSVTVSKNDG 840
  841 NGTAILVSWQ PPPEDTQNGM VQEYKVWCLG NETRYHINKT VDGSTFSVVI PSLVPGIRYS 900
  901 VEVAASTGAG AGVKSEPQFI QLDSHGNPVS PEDQVSLAQQ ISDVVKQPAF IAGIGAACWI 960
  961 ILMVFSIWLY RHRKKRNGLT STYAGIRKVP SFTFTPTVTY QRGGEAVSSG GRPGLLNISE1020
 1021 PATQPWLADT WPNTGNNHND CSINCCTAGN GNSDNNLTTY SRPADCIANY NNQLDNKQTN1080
 1081 LMLPESTVYG DVDLSNKINE MKTFNSPNLK DGRFVNPSGQ PTPYATTQLI QSNLSNNMNN1140
 1141 GSGDSSEKHW KPPGQQKQEV PPVQYNIMEQ NKLNKDYRAN DTVPPTIPYN QSYDQNTGGS1200
 1201 YNSSDRGSST SGSQGHKKGA RTPKVPKQGG MNWADLLPPP PAHPPPHSNS EEYNISVDES1260
 1261 YDQEMPCPVP PARMYLQQNE LEEEEDERGP TPPVRGAASS PAAVSYSHQS TATLTPSPQE1320
 1321 ELQPMLQDCP EEIGHMQHQP DRRRQPVSPP PPPRPISPPH TYGYISGPLV SDMDTDAPEE1380
 1381 EEDEADMEVA KMQTRRLLLR GLEQTPASSV GDLESSVTGS MINGWGSASE EDNISSGRSS1440
 1441 VSSSDGSFFT DADFAQAVAA AAEYAGLKVA RRQMQDAAGR RHFHASQCPR PTSPVSTDSN1500
 1501 MSAAVMQKAR PAKKQKHQPG HLRREVYTDD LPPPPVPPPA IKSPTVQSKA QLEVRPVMVP1560
 1561 KLPSIEARTD RSSDRKVGSY KGREVLDGRQ VADMRTNPGD TREAQEQQND GKGRVNKAAK1620
 1621 RDLPPAKTHL IQEDILPYCR PTFPTSNNPR DPSSSSSMSS RGSGSRQREQ ANVGRRNIAE1680
 1681 MQVLGGYERG EDNNEELEET ES

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