YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74000518
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSNSKYEAG LRTADDQKPC PLEVDLTVQQ ILPTCQRSSN SRKSKLRGFS PGKKALKPLW  60
   61 AADPQPRSRP EIPEALRGWS ELRQQRPAAD GRDRSNLPTG SAGLAPLQPL RLGRRQGWGG 120
  121 PRGSALGNWR SGEVGAAGAA ARPPRAVPCR GRAASAMAGS SAWKRLKSLL RKDDAPLFLN 180
  181 DTSAFDFSDE VGDEGLSRFN KLRVVVADDG SEIPERPING AHPALQADDD SLLDQDLPLA 240
  241 NSQLSLKVDP CDNCSRQREL LKQRKVKTRL TIAAVLYLLF MIGELVGGYI ANSLAIMTDA 300
  301 LHMLTDLSAI ILTLLALWLS SKSPTKRFTF GFHRLEVLSA MISVLLVYIL MGFLLYEAVQ 360
  361 RTIHMKYEIN GDIMLITAAV GVAVNVIMGF LLNQSGHHAH SHSLPSNSPT IGSGCRHNHG 420
  421 QDSLAVRAAF VHALGDLVQS VGVLIAAYII RFKPEYKIAD PICTYVFSLL VAFTTFRIIW 480
  481 DTIVIILEGV PSHLNVDYIK EALMKIEDVY SVEDLNIWSL TSGKPTAIVH IQLIPGSSSK 540
  541 WEEVQSKAKH LLLNTFGMYK CTIQLQSYRQ EVDRTCAHCQ SSSP

Type	Start	End	Confidence
Cytoplasmic	1	269	0.89
Transmembrane Helix	270	291	0.91
Non-Cytoplasmic	292	299	0.72
Transmembrane Helix	300	320	0.90
Cytoplasmic	321	334	0.74
Transmembrane Helix	335	356	0.88
Non-Cytoplasmic	357	372	0.77
Transmembrane Helix	373	393	0.93
Cytoplasmic	394	428	0.80
Transmembrane Helix	429	450	0.71
Non-Cytoplasmic	451	457	0.54
Transmembrane Helix	458	480	0.72
Cytoplasmic	481	584	0.68