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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|74000349
Protein type: Transmembrane
Type Confidence: 0.58
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAFLIKSSS HKAGVPGLDK KPHLDLSPDF ASPPPTLATP ERSSPHGRRA QSGPPARLHL  60
   61 SPPQSGPPAR LHLSPPQSGP PARLHLSPPQ SRLPARLHLS PPHLLPGFRL AAGPARPQPG 120
  121 ASQPIGGCHT AARAGLGGWD LRLQVRLGQT RERRLRVRGR GRPSQSPPSP DPPGRPQPHL 180
  181 VAMRPRCRAL LPGVALLFAA AGLASASDVL ELTDDNFESR ISDTGSAGLM LVEFFAPWCG 240
  241 HCKRLAPEYE AAATRLKGIV PLAKVDCTAN TNTCNKYGVS GYPTLKIFRD GEEAGAYDGP 300
  301 RTADGIVSHL KKQAGPASVP LRTEEEFEKF ISDKDASVVG FFQDLFSEAH SEFLKAASNL 360
  361 RDNYRFAHTN VESLVNKYDD DGEGITLFRP SHLMNKFEDK TVAYIEQKMT SGKIKKFIQE 420
  421 NIFGICPHMT EDNKDLIQGK DLLVAYYDVD YEKNAKGSNY WRNRVMMVAK KFLDAGNKLN 480
  481 FAVASRKTFS HELSDFGLES TAGEIPVVAI RTAKGEKFVM QEEFSRDGKA LERFLQDYFD 540
  541 GNLKRYLKSE PIPESNDGPV KVVVAENFDE IVNDENKDVL IEFYAPWCGH CKNLEPKYKE 600
  601 LGEKLRKDPN IIIAKMDATA NDVPSPYEVR GFPTIYFSPA NKKLNPKKYE GGRELSDFIS 660
  661 YLQREATNPP VIQEEKAKKK KKAQEDL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle