YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57648362
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.96
Transmembrane Helix	7	28	0.94
Cytoplasmic	29	38	0.86
Transmembrane Helix	39	59	0.92
Non-Cytoplasmic	60	86	0.90
Transmembrane Helix	87	109	0.90
Cytoplasmic	110	118	0.89
Transmembrane Helix	119	139	0.92
Non-Cytoplasmic	140	145	0.79
Transmembrane Helix	146	166	0.93
Cytoplasmic	167	177	0.89
Transmembrane Helix	178	200	0.87
Non-Cytoplasmic	201	219	0.93
Transmembrane Helix	220	241	0.91
Cytoplasmic	242	258	0.88
Transmembrane Helix	259	280	0.90
Non-Cytoplasmic	281	287	0.68
Transmembrane Helix	288	310	0.90
Cytoplasmic	311	321	0.81
Transmembrane Helix	322	342	0.83
Non-Cytoplasmic	343	352	0.65
Transmembrane Helix	353	372	0.90
Cytoplasmic	373	391	0.90
Transmembrane Helix	392	413	0.91
Non-Cytoplasmic	414	424	0.87
Transmembrane Helix	425	446	0.89
Cytoplasmic	447	546	0.96
Transmembrane Helix	547	568	0.91
Non-Cytoplasmic	569	605	0.92
Transmembrane Helix	606	624	0.90
Cytoplasmic	625	699	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHTYEYAWII PFVPLPVPVL IGVGLLLFPR ATKNLRRMWA FQSVLLLSIV MILSIDLSIQ  60
   61 QINSSSIYQY VWSWIINNDF SLEFGYLIDP LTSIMSILIT TVGIMVLIYS DNYMSHDQGY 120
  121 LRFFSYMSFF STSMLGLVTS SNLIQIYIFW ELVGMCSYLL IGFWFTRPVA ANACQKAFVT 180
  181 NRVGDFGLLL GILGFYWITG SFEFRDLFEI FNNLIYNNEV NFLFVILCAV LLFAGAVAKS 240
  241 AQFPLHVWLP DAMEGPTPIS ALIHAATMVA AGIFLVARLL PLFIVIPYIM NLISLIGIIT 300
  301 VFLGATLALA QKDIKRGLAY STMSQLGYMM LALGMGSYRT ALFHLITHAY SKALLFLGSG 360
  361 SVIHSMETVV GYSPDKSQNM VLMGGLRKHV PITKTAFLLG TLSLCGIPPL ACFWSKDEIL 420
  421 NDSWLYSPIF AIIAWFTAGL TAFYMFRIYL LTFEGHLNVH CQNYSGKKST PFYSISLWGK 480
  481 RGSKTINKSV RLLTLLRMNN NESMSFLKQK TYRIDENIKK MTQPFITIIH FATKNTYSYP 540
  541 YESENTMLFP LLVLVLFTLF VGSIGIPFNP EGIDLDILSK WLTPSINLLH QNSKDSLDWY 600
  601 EFLKDTIFSV SIAYFGIFIA RFLYKPLYSS LQNLDLINSF GKIGSKRFLW DKLINVLYNW 660
  661 SYNRGYIDAF YETSLTGGIR GLAELTHFFD RRVIDGITY