YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89886327, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRKGLIPE DYLLTRLAED VLQPKFKTKQ RKARFVAKNG TCNVAHTNIR EQGRFLQDVF  60
   61 TTLVDLKWLH TLVIFTMSFL CSWLLFGMIW WLIAFAHGDL DLKGEDFVPC VTDIHSFSSA 120
  121 FLFSIEVQVT IGFGGRMITE ECVSAIVILI LQNIVGLVIN AIMLGCIFMK TAQANRRAET 180
  181 LIFSKHAVIT VRNNKLCFMF RLGDLRKSMI ISATVHMQVV RKTVTSEGEM VPLDQIDIQM 240
  241 DNPVGTNSIF LVSPLIISHT IDKNSPLYDL SADDLLHEDI EVIVVLEGVV ETTGITTQAR 300
  301 TSYLSEEILW GHRFVPTVSE EDGMYAVDYS KFGNTVKVAT PNSSARTLEE AGGMERFKLQ 360
  361 ETSGACAAVR RRVKHPNTKE M

Type	Start	End	Confidence
Cytoplasmic	1	71	0.92
Transmembrane Helix	72	94	0.91
Non-Cytoplasmic	95	116	0.86
Transmembrane Helix	117	135	0.53
Cytoplasmic	136	144	0.43
Transmembrane Helix	145	169	0.87
Non-Cytoplasmic	170	381	0.54