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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: COHA1_CANLF
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVTKKNKRD GSEVTERIIT ETVSTRLTSL PPKGGTSNGY AKTGSLSGGS RLEKHSLTHG  60
   61 SSGYINSSGS TRGNASTSSY RRAHSPASTL PNSPGSTFER KIHITRHGTY EGSSSGNSSP 120
  121 EYPRKEFASS STRGRSQTRE SEIRVRLQSA SPSTRWTELD DVKRLLKGSR SASVSPTRNS 180
  181 SNTLPIPKKG TVETKMVTAS SQSVSGTYDA TILDANLPSH MWSSTLPAGS SMGTYHNNVT 240
  241 TQSSSLLNTN AYSAGSVFGV PNNMTSGSST LHPGVSTCSS VFGMQNNLAP SSSTLSHSTA 300
  301 TASTAYGMKK NLPQSPAVVS TGVSTSAACT TNVQNEDLLH KDCKFLILEK DNTPAKKEME 360
  361 LLIMTKDSGK VFTASPASIA ATSFSDDTLK KEKQAAYTAD TCLVSDANGD VKTVSTKGKA 420
  421 ASAEMHNYNH RGGGSGGGGG GGGGGGGGPW GAAPAWCPCG SCCSWWKWLL GLLLTWLLLL 480
  481 GLLFGLIALA EEVRALKARV AELEQSRSNV LLFKEEMQRA NKDWLQGEAP SVEAGGKLGL 540
  541 DGHQQEELWL FVRNRLMAEQ ENGNLRGSPG PKGDMGSQGP KGDRGLPGTP GIPGVLGHPG 600
  601 PQGPKGQKGS VGEPGMEGPM GQRGREGPMG PRGEPGPPGF GEKGDRGAAG EPGVQGPPGV 660
  661 PGSVGPKGSG GSPGPRGPPG PMGPQGLRGE VGLPGIKGDK GPLGSPGPKG DQGEKGPRGL 720
  721 TGEPGLRGLP GAVGEPGAKG AVGPAGPDGH QGPRGEQGLT GMPGTRGPPG PSGDPGKPGF 780
  781 TGPQGPQGLP GTPGRPGAKG EPGAPGRIMT SEGSSTITVP GPPGPPGAMG PPGPPGAPGP 840
  841 RGERGLAGES FMGSSSSISE LLSTRSFKEP MQTCHRASFL EARVAKTTPA LSGRHCVLDT 900
  901 CRKGVDLRGP PGPPGPPGPP DLPFRVRQDP EAPQVKAELP GKRYESIGTQ SLGLALGKSL 960
  961 PATSPQHRVL ETYFSGPPGP PGPPGPKGDQ GSSSLGLNLQ GPPGPRGPKG DKGGSSSSTM1020
 1021 FMPGPPGPPG PPGPPGSISS SGREIQQYIS EYLQSDSIRS YLSGVQGPPG PPGPPGPVTT1080
 1081 IAGETFDYSE LASRVSSYLQ TSGYSIGSSV SISTEDIVAA LQREYLRRAG GWEPWGLGLP1140
 1141 LPELLRASEE ALVLVPSGQG RPGCGRAVAR EPCGLGGPTP ALPVLAGDDV RQYLRQYVIG1200
 1201 DWSLQSLDYA ELSSRILSYM SSSGISIGLP GPPGPPGLPG TSYEELLSLL QGSEYRGIIG1260
 1261 PPGPPGPPGI PGNAWSSISV EDLSSYLHTA GVSSIPGPPG PPGPPGPRGP PGVSGALATY1320
 1321 AAENSDSFRS ELISYLTSPD VRSFIVGPPG PPGPQGPPGD SRLVSMDGSY SRDSRSSSHS1380
 1381 ASVSRGSSYS SSMGIGGASG GSLGEAGAFG LDMGLGRGYG GAAEGGMYGG EGGPLGAGFA1440
 1441 GGLDYNELAV RVSESLQRQG LLQGMAYTVQ GPPGQPGPQG PPGISKVFSA YSNVTEDLMD1500
 1501 FFRSKSTSVI VFLTPCCPVR GALQDHQVGL GHPALEGTRE KKETKVTKSM RGGEREASPS1560
 1561 SHELPLEEQP LASVLAMAYG VHVKISPKGG SWRLTSY

YRC Informatics Platform - Version 3.0
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