YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73998339
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	151	0.99
Transmembrane Helix	152	172	0.92
Non-Cytoplasmic	173	182	0.78
Transmembrane Helix	183	201	0.96
Cytoplasmic	202	214	0.86
Transmembrane Helix	215	234	0.97
Non-Cytoplasmic	235	241	0.77
Transmembrane Helix	242	261	0.96
Cytoplasmic	262	269	0.88
Transmembrane Helix	270	289	0.93
Non-Cytoplasmic	290	305	0.82
Transmembrane Helix	306	327	0.90
Cytoplasmic	328	338	0.83
Transmembrane Helix	339	359	0.95
Non-Cytoplasmic	360	369	0.76
Transmembrane Helix	370	388	0.95
Cytoplasmic	389	398	0.81
Transmembrane Helix	399	418	0.94
Non-Cytoplasmic	419	423	0.87
Transmembrane Helix	424	446	0.87
Cytoplasmic	447	450	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLDGAGAA EVPEPGLRPA DDAPRGXSAR GHRRKFLVVF GAPGDSGTGV EVRRCGGTAG  60
   61 PGCSVRALPE VGGRRPEARE NLFFEEEVEA SEHMYLQQEE VEASEHTRIF YYRGHAVAYA 120
  121 PGKIVHHHTL VPIHKCLSLV GKEAKKKAPC PGLGLFYTLL SAFLFSVGSL FVKKVQDVHA 180
  181 VEISAFRCVF QMLVVIPCLI YRKTGFIGPK GQRIFLFLRG VLGSTAMILL YYAFQATSLA 240
  241 DATVITFSTP VFTSIFAWIF LKEKYSPWDA LFTVFTITGV ILIVRPPFLF GAGASAASGD 300
  301 GDYSVHLKGT VAAVAHAVFA ALTLVILRRM GKSVDYFLSI WYYVILGLLE CVVVLFILGE 360
  361 WSLPYCGLDR LFLILIGLFG LGGQVFLAKA IQIEKAGPVA IMKTMDVVFA FILQIIFFND 420
  421 VPTWWTVGGA LCVIASSSGA AIRKWCHGAQ