YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57106524
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVIGVDGT GAGLNAQAPG QSASGMGRET GKGKGAKWLC GHMPRGLVGG AVARRTPGAS  60
   61 CFRFPEWSTA RRPGERWPLT RVPGPGSAAG PSLAPSPSPR RVFSRGSCAL AAPFARDTMF 120
  121 PFFSRWRTGL LLPLLLAVAV RESWQTEEKT CDLVGEKGRE SEKELALLKR LQPLYNKSFQ 180
  181 STVGQGPDTY IYMFRVCREA GNRTSGAGLV QINKSNGKET VVGRLNETHI FNGSNWIMLI 240
  241 YKGGDEYDNH CGMEQRRAVV MISCNRHTLA DNFNPVSEER GKVQDCFYLF EMDSSLACSP 300
  301 ETSHLSVGSI LLVTFASLVA VYIIGGFLYQ RLVVGAKGME QFPHLAFWQD LGNLVADGCD 360
  361 FVCRSKPRNV PAAYRGVGDD QLGEESEERD DHLLPM

Type	Start	End	Confidence
Non-Cytoplasmic	1	306	0.89
Transmembrane Helix	307	329	0.86
Cytoplasmic	330	396	0.87