YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73997592
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGEVAWNAA DTKQAELSNE ERLQMHFVKL GLSSKETRRT CGLIIYVNYV QTLLQKLVKL  60
   61 PNCFGSQSAY IQNGKSSRSP VRTAQVPAPT VRGQSPGGAA GGQGRRPGGG DYPGTENQAI 120
  121 GGGAWPGWES GWQRRRANKS KPARAGAVLG PRGRAGQVTA VAVRPAAGTG FQTKIEKMVD 180
  181 LTELMENEVF MAFASYTTII LSKMMFMSTA TAFFRLTRKV FANPEDCASF GKGENAKKYL 240
  241 RTDDRVERVR RAHLNDLENI VPFLGIGLLY SLSGPDLSTA LLHFRLFVGA RIYHTIAYLT 300
  301 PLPQPNRALA FFIGYGVTFS MAYRLLKSRL YL

Type	Start	End	Confidence
Non-Cytoplasmic	1	191	0.60
Transmembrane Helix	192	213	0.54
Cytoplasmic	214	259	0.76
Transmembrane Helix	260	280	0.64
Non-Cytoplasmic	281	307	0.76
Transmembrane Helix	308	326	0.92
Cytoplasmic	327	332	0.84