YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP6_SODGM
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASGEISTP QEYIGHHLNN LQLDMRTFEL VNHHTASSFW VLNIDSMFFS LLLGAIFLLI  60
   61 FGRVAKGATS GVPGKMQTFV ELVVGFVDGS VRDMFHGKSK LIAPLALTIF VWVFLMNLMD 120
  121 LLPIDLLPYL GEHVLGLPAL RVVPSADVNI TLSMALGVFI LILYYSVMMK GIGGFVKELT 180
  181 LQPFNHPIFI PVNLILEGVS LLSKPVSLGL RLFGNMYAGE LIFILIAGLL PWWSQWILNV 240
  241 PWAIFHILII TLQAFIFMVL TIVYLAMASE EH

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.72
Transmembrane Helix	41	65	0.81
Cytoplasmic	66	100	0.75
Transmembrane Helix	101	124	0.85
Non-Cytoplasmic	125	147	0.74
Transmembrane Helix	148	167	0.92
Cytoplasmic	168	212	0.74
Transmembrane Helix	213	234	0.89
Non-Cytoplasmic	235	242	0.75
Transmembrane Helix	243	266	0.93
Cytoplasmic	267	272	0.78