YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85060296, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRWRISPRS SFARSLLLIV TLLFVSLVTT YLVVLNFAIL PSLQQFNKVL AYEVRMLMTD  60
   61 QLQLEDGTLL EVPPAFRREI YRELGISLYT NPAAEESGLR WAQHYEFLSQ QMAQQLGSPT 120
  121 DVRVEVTKNS PVVWLKTWLS PDIWVRIPLT EIHQGGFSPL FRYTLAIMLL AIGGAWLFIR 180
  181 IQNRPLVDLE HAALQVGKGI IPPPLREYGA SEVRSVTRAF NQMTAGVKLL ADDRTLLMAG 240
  241 VSHDLRTPLT RIRLATEMMS AEDGYLAESI NKDIEECNAI IEQFIDYLRT GQEMQTEMAD 300
  301 LNSILTEVVA AESGYERVIE TDICGEELIV NVNPLSIKRA ALNMVVNAAR YGNGCIKVNS 360
  361 GRETNRVWFE VEDDGPGIQP DQLQYLFQPF VRGDSARSTS GTGLGLAIVQ RIIDAHAGKL 420
  421 EIGRSARQGL RIRAYLPLPV ASVDHGASVS KAKAAGKSAD

Type	Start	End	Confidence
Cytoplasmic	1	15	0.72
Transmembrane Helix	16	35	0.78
Non-Cytoplasmic	36	159	0.94
Transmembrane Helix	160	179	0.67
Cytoplasmic	180	460	0.65