YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85059915, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYRLITAL VLIPIVIAAL FLLPSVGFAL VTLAVCMLSA WEWGQLAGLA SRSQRIWLAI  60
   61 LCGLLLALMM LTVPAYRPFM TVWQAQYALW AALAWWLAAA LLVLCYPRSA TLWRESRPLR 120
  121 LAFGILTILP FFWGMLALRQ HHYDINHFTG AWWLLYVIVL VWGSDSGAYM FGRALGRHKL 180
  181 APKVSPGKTW EGLVGGLVTS AVIAWLFGKY APLDAAPLTL LVCSIVAALA SVLGDLTESM 240
  241 FKREAGIKDS GHLIPGHGGI LDRIDSLTAA VPVFACLMLL VFNAI

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.62
Transmembrane Helix	7	41	0.79
Cytoplasmic	42	55	0.78
Transmembrane Helix	56	76	0.95
Non-Cytoplasmic	77	86	0.81
Transmembrane Helix	87	106	0.94
Cytoplasmic	107	118	0.82
Transmembrane Helix	119	138	0.93
Non-Cytoplasmic	139	150	0.80
Transmembrane Helix	151	172	0.91
Cytoplasmic	173	188	0.90
Transmembrane Helix	189	208	0.93
Non-Cytoplasmic	209	214	0.84
Transmembrane Helix	215	237	0.88
Cytoplasmic	238	263	0.90
Transmembrane Helix	264	282	0.70
Non-Cytoplasmic	283	285	0.53