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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: BAMA_SODGM
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMKKLLIAS LLLSSATVYG ADGFVVKDIH FEGLQRVAVG AALLSMPIRV GDTATDEDIG  60
   61 NTIRALFATG NFEDVRVLRD GDSVVVQVKE RPTIASITFS GNKAVKEEML KQNLDAQGVR 120
  121 VGEALDRTTI SNIEKGLEDF YYSAGKYSTT VKAVVTPLPR NRVDLKLVFT EGVSAKIQQI 180
  181 NIVGNHAFTT DELISRFQLR DEVPWWNVVG DRKYQKQKLA GDLETLRSFY LDRGYARFNI 240
  241 DSTQVSLTPD KKGIYITLNI TEGAQYKLSG TVVNGNMAGH SAEIEQLAKV HPGELYNGAK 300
  301 VTKMENDIKQ LLGRYGYAYP RVATQQEIND ADKTVKLHIS VDAGNRFYVR HVRFEGNDIT 360
  361 KDSVLRREMR QMEGAWLGSN LVDQGKERLN RLGYFETVDT ETQRVPGSPD QVDVVYKVKE 420
  421 RNTGSINVGV GFGTESGVSF QFGIQQDNWL GTGNSVGFSG TKNDYQTYAE LSMTDPYFTV 480
  481 DGVSLGGKIF YNDFSADDAD LSDYDLRRYG VGTTLGFPIS ENHSLNFGLD YVHDDLTNMQ 540
  541 PQVTMWRYLD SVGINPKVVT TNKADSDADF SADDFFLSMG WSYNNLDRGY FPTAGSRASL 600
  601 TGKVTVPGSD NEYYKITFDA SHYIPLSESG NWVLMGRARA GYADGLGGKN VPFYDNFYAG 660
  661 GSNTVRGFRS NTIGPKAAYY KCNSGNTRYS DCPVDKSSDA VGGNAMAIAS AELIMPTPFL 720
  721 SEKYANSVRT SLFVDGGTVW DTSWQNTSAT RAAGIPDYSD PGNIRISSGI ALQWMSPLGP 780
  781 LVFSYAQPVK KYDGDKSEQF QFNIGKTW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle