YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIPA_SODGM
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQDLRLILI VVGAIAIIAL LLHGLWTSRK ERSAVFRDRP VKRLKQERQD QDEPPLSERD  60
   61 EGVGEVRVTR VRHDDDAPLS RLASRVGEGE RDDASDPLLA DGFGQPVSNA PRAHREPPQI 120
  121 RSAEPAMPAR EQVASDSDDM GGGDDDDPLL PAASRAAAPQ TDYRSSAPAA DAPAPAAESS 180
  181 VKAAQVPEKE TVLVLHVAAH NGTVLSGEEL LQSVLQAGFQ FGEMNIFHRH LNPSGSGPVL 240
  241 FSLANMVKPG SFNPEDMADF TTPGISMFMM VPSYGDAHQN FKLMLQSAQR IADDCGGVVL 300
  301 DDERRMMTPQ KLDGYKARIR QVLEANAGV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.76
Transmembrane Helix	7	27	0.92
Non-Cytoplasmic	28	329	0.85