YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85059465, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.91
Transmembrane Helix	6	25	0.93
Cytoplasmic	26	32	0.88
Transmembrane Helix	33	51	0.94
Non-Cytoplasmic	52	56	0.84
Transmembrane Helix	57	75	0.96
Cytoplasmic	76	85	0.86
Transmembrane Helix	86	106	0.92
Non-Cytoplasmic	107	124	0.88
Transmembrane Helix	125	144	0.95
Cytoplasmic	145	159	0.84
Transmembrane Helix	160	179	0.94
Non-Cytoplasmic	180	185	0.80
Transmembrane Helix	186	207	0.89
Cytoplasmic	208	215	0.74
Transmembrane Helix	216	234	0.89
Non-Cytoplasmic	235	239	0.75
Transmembrane Helix	240	260	0.92
Cytoplasmic	261	462	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEGLVTAAY IAAAILFIFS LAGLSKHETS RQGNLFGITG MAIALVATVL GPDAGNVGWI  60
   61 IVAMVIGGAI GIYLARKVEM TEMPELVAIL HSFVGLAAVL VGFNSYPEHQ AINNAVMENI 120
  121 HLTEVFLGIF IGAVTFTGSI VAFGKLHGKI SSRPLMLPRC YQMNLAALVI SFLLLILFVR 180
  181 SNNIGLQVLE LLLMTIIALA FGWHLVASIG GADMPVVVSM LNSYSGWSAA AAGFMLNNDL 240
  241 LIVTGALVGS SGAILSYIMC KAMNRSFISV IAGGFGNDIS VGDPEAEMGD YRETTAEEVA 300
  301 ELLKNSSSVI ITPGYGMAVA QAQYPVHDIT AKLRARGVNV RFGIHPVAGR LPGHMNVLLA 360
  361 EAKVPYDIVL EMDEINEDFS TTDTVLVIGA NDTVNPAAQE DPRSPIAGMP VLEVWKAQNV 420
  421 VVFKRSMNTG YAGVQNPLFF KDNTQMLFGD AKQSVEAILR AL