YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85059345, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAITTKVKK AVIPVAGLGT RMLPATKAIP KEMLPLVDKP LIQYVVNECI AAGINEIILV  60
   61 THSSKNSIEN HFDTSFELEA MLEKRVKRQL LAEIQAICPP YVTIMQVRQG LAKGLGHAVL 120
  121 CAHPLVGDEP VAVILPDVII DEYESNLKTE NLAAMLKRFE DTGRSQILVE PVEDVTSYGV 180
  181 VDCQGKTLNP GESVEMVGVV EKPSAEEAPS NLSVVGRYVL SAYIWALLEK TPPGAGNEIQ 240
  241 LTDAIAMLMD KESVEAYHLM GLNHDCGNKL GYMQAFVEYG LRHESLGKEF KTWLKDAITQ 300
  301

Type	Start	End	Confidence
Signal Peptide	1	28	0.56
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	300	0.99