YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85058053, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.68
Transmembrane Helix	10	32	0.81
Cytoplasmic	33	52	0.73
Transmembrane Helix	53	77	0.86
Non-Cytoplasmic	78	90	0.76
Transmembrane Helix	91	111	0.90
Cytoplasmic	112	120	0.62
Transmembrane Helix	121	139	0.84
Non-Cytoplasmic	140	155	0.79
Transmembrane Helix	156	181	0.88
Cytoplasmic	182	206	0.99
Transmembrane Helix	207	227	0.92
Non-Cytoplasmic	228	233	0.87
Transmembrane Helix	234	255	0.92
Cytoplasmic	256	413	0.85
Transmembrane Helix	414	433	0.87
Non-Cytoplasmic	434	462	0.63
Transmembrane Helix	463	497	0.56
Cytoplasmic	498	505	0.56
Transmembrane Helix	506	529	0.92
Non-Cytoplasmic	530	532	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHLFTCMEF HTGLMLVLAL IFVLVYEAIN GFHDTANAVA TVIYTRALRS QLAVAMSGVF  60
   61 NFLGVLMGGL SVAYAIVHLL PTDLLLNVSS AHGLAMMFSM LLAAILWNLG TWYFGLPASS 120
  121 SHTLIGAIIG IGLTNALVSD SSVVQALNIP KLIEIFLSLI ISPIVGLVLA GAMVFVLHRY 180
  181 WSSTKKRRRI HLTPAEREKK DGKRKPPFWT RIALIFSAAG VSFSHGANDG QKGIGLIMLV 240
  241 LIGVAPAGFV VNMNASGYDI SRTRDAVNHL QQYYTQHPGA FTHVVGPDEQ PLPSPAAENA 300
  301 VPGAAPAVDP AVPPAAIGAP MANGQRLDQG DTPQPQEFHC DLSRALFAIN RASLLLGNLD 360
  361 SYETLNADQR SHVRRLLMCI ADTADKVAKL PETPSADKRF LSNLRQDLLY TVEYAPMWII 420
  421 IAVALALSLG TMVGWRRVAT TIGEKIGKKG MTYAQGLSAQ MTAAVSIGVA SYTGMPVSTT 480
  481 HVLSSAVTGT MLVDGGGVQG KTVKNILLAW VLTLPVAIIL AGSLYWLALK LI