YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85058039, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQFILRRLG LVIPTFIGIT LLTFAFVHLI PGDPVLIMAG ERGISPERHA ELMEQMGLDK  60
   61 PLFQQYFHYI AGVLQGDLGT SLKSRLPVWQ EFVPRFQATL ELGVCAMIFA VLVGIPVGVL 120
  121 AAVKRGSIFD HTAVGISLTG YSMPIFWWGM MLIMLVSVHL NLTPVSGRVG DTVFLDDSQP 180
  181 LTGFMLIDTL IWGEPGDFKD AVMHIILPAI VLGTIPLAVI VRMTRSAMLE VLSEDYIRTA 240
  241 RAKGLSRLRV IVVHALRNAL LSVVTVIGLQ VGTLLAGAIL TETIFSWPGI GRWLIEALQR 300
  301 RDYPVVQGGV LLVATLIILV NLLVDLLYGV VNPRIRHKK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.96
Transmembrane Helix	9	30	0.94
Non-Cytoplasmic	31	98	0.95
Transmembrane Helix	99	123	0.88
Cytoplasmic	124	133	0.78
Transmembrane Helix	134	160	0.73
Non-Cytoplasmic	161	200	0.91
Transmembrane Helix	201	221	0.94
Cytoplasmic	222	258	0.90
Transmembrane Helix	259	280	0.90
Non-Cytoplasmic	281	307	0.83
Transmembrane Helix	308	331	0.87
Cytoplasmic	332	339	0.90