YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85815798
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRSSPDPA SSSPSASSSP SSPSSSSSED SSSPMSMPCK RRARPRTDKS TGKAKRPKKE  60
   61 SKEVVDPSSN GGGGGKRSSI YRGVTRHRWT GRFEAHLWDK NCSTSLQNKK KGRQVYLGAY 120
  121 DSEEAAARAY DLAALKYWGP ETVLNFPLEE YEKERSEMEG VSREEYLASL RRRSSGFSRG 180
  181 VSKYRGVARH HHNGRWEARI GRVLGNKYLY LGTFDTQEEA AKAYDLAAIE YRGANAVTNF 240
  241 DISCYLDQPQ LLAQLQQEPQ LLAQLQQELQ VVPALHEEPQ DDDRSENAVQ ELSSSEANTS 300
  301 SDNNEPLAAD DSAECMNEPL PIVDGIEESL WSPCLDYELD TMPGAYFSNS MNFSEWFNDE 360
  361 AFEGGMEYLF EGCSSITEGG NSMDNSGVTE YNLFEECNML EKDISDFLDK DISDFLDKDI 420
  421 SISDRERISP QANNISCPQK MISVCN

Type	Start	End	Confidence
Signal Peptide	1	27	0.89
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	446	0.99