YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85719121
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.85
Transmembrane Helix	55	74	0.90
Non-Cytoplasmic	75	83	0.86
Transmembrane Helix	84	106	0.90
Cytoplasmic	107	125	0.87
Transmembrane Helix	126	150	0.84
Non-Cytoplasmic	151	228	0.98
Transmembrane Helix	229	250	0.92
Cytoplasmic	251	258	0.90
Transmembrane Helix	259	281	0.91
Non-Cytoplasmic	282	311	0.90
Transmembrane Helix	312	330	0.93
Cytoplasmic	331	340	0.84
Transmembrane Helix	341	364	0.91
Non-Cytoplasmic	365	396	0.87
Transmembrane Helix	397	414	0.84
Cytoplasmic	415	443	0.78
Transmembrane Helix	444	466	0.88
Non-Cytoplasmic	467	479	0.82
Transmembrane Helix	480	499	0.93
Cytoplasmic	500	519	0.91
Transmembrane Helix	520	539	0.97
Non-Cytoplasmic	540	557	0.90
Transmembrane Helix	558	579	0.93
Cytoplasmic	580	634	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEKKGHLIPN GNAHPSVNGT LNGGPMSAAT GAISAVEKKR EGYPERETWT RQMDFIMSCV  60
   61 GFAVGLGNVW RFPYLCYKNG GGVFLIPYVL FIFLGGIPIF FLEIALGQFM KAGSINVWNI 120
  121 APLFKGLGYA SMVIVFFCNT YYIMVLAWGF YYFIKSFNAT LPWSTCDNPW NTENCIEIFR 180
  181 QGDCKNGTIG NSTFGNLTCE ELANGRSPII EFWENKVLNI SDGLDEPGAV NWELMLCLLA 240
  241 VWVMVYFCVW KGVKSAGKIV YFTATFPYVV LIILLVRGVT LPGAYDGILY YVKPDWSKLG 300
  301 EAQVWIDAGT QIFFSYAIGL GALTALGSYN RFNNDCYKDA FVLALINSGT SFFAGFVVFS 360
  361 ILGFMASEQG VDISEVAESG PGLAFIAYPR AVSMMPVAPV WAALFFIMLL LLGLDSQFVG 420
  421 VEGFVTGILD LFPGKYYMRY QREIAVAICC LLCFIIDLSM VTQGGMYVFQ LLDYYSASGM 480
  481 TLLWQAFWEC VVVAWVYGAD RFMDDIARMI GYRPFPWMKW CWSIITPCVC MGIFLFHLLN 540
  541 YKPLTYNNVY VYPWWGEVIG WCLALSSMLC IPVSLVYKLS GAKGTFKERW ENLTKPVWGA 600
  601 HHLEYMAPDT DIKSLASLSP GMEENKVIIF ESVM