YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84367340, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHDHNHAPS EIRHETPLWW ALGLTATFLL AEIIGAFVTN SLALLSDAAH MATDTVGLMI  60
   61 ALVAVRLSRR PADARRTYGY VRLEALGALA NGALLFAVGG YILWEAAQRV RAPQDIAYGG 120
  121 MLLIAGFGLV INLIAMKLLH AGSGESLNVK GAYLEVWSDM LGSMAVIIGA LLIHWTSWQW 180
  181 IDPVLAVLIG LWVLPRTWVL LREAINVLLE GVPKGIDLAQ VQQALTSHPG VEDVHDLHVW 240
  241 ALASSTPALT AHIVVNEATD RDRLRDALAT LLHDRFDIVH VTLQVESGDC GTEPCGTPKP 300
  301 AADAGHDAHH GHSHAHGHSH H

Type	Start	End	Confidence
Cytoplasmic	1	17	0.96
Transmembrane Helix	18	39	0.93
Non-Cytoplasmic	40	47	0.79
Transmembrane Helix	48	67	0.93
Cytoplasmic	68	84	0.79
Transmembrane Helix	85	104	0.92
Non-Cytoplasmic	105	115	0.88
Transmembrane Helix	116	136	0.93
Cytoplasmic	137	155	0.80
Transmembrane Helix	156	175	0.93
Non-Cytoplasmic	176	179	0.78
Transmembrane Helix	180	200	0.83
Cytoplasmic	201	321	0.94