YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77019726, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	21	0.96
Transmembrane Helix	22	42	0.94
Non-Cytoplasmic	43	52	0.86
Transmembrane Helix	53	73	0.92
Cytoplasmic	74	93	0.86
Transmembrane Helix	94	113	0.96
Non-Cytoplasmic	114	120	0.85
Transmembrane Helix	121	141	0.93
Cytoplasmic	142	149	0.85
Transmembrane Helix	150	172	0.92
Non-Cytoplasmic	173	192	0.90
Transmembrane Helix	193	214	0.93
Cytoplasmic	215	233	0.89
Transmembrane Helix	234	252	0.93
Non-Cytoplasmic	253	268	0.79
Transmembrane Helix	269	289	0.91
Cytoplasmic	290	296	0.79
Transmembrane Helix	297	319	0.88
Non-Cytoplasmic	320	323	0.82
Transmembrane Helix	324	347	0.86
Cytoplasmic	348	362	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPSSTEHP EVVGKLSTLD RYLAVWIGVA MVVGLLVGRW IPGVNTALDK VQIDGISLPI  60
   61 ALGLLIMMYP VLAKVRYDRL DTVTGDKKLL AGSLFLNWVL GPALMFALAW LFLPDLPEYR 120
  121 TGLIIVGIAR CIAMVIIWND LACGDREAAA VLVAINSVFQ VIMFAVLGWF YLSVLPGWLG 180
  181 LEQTTIDTSP WQIAKSVLIF LGIPLLAGFL SRFFGERAKD RDWYDNKFIP KISPWALYGL 240
  241 LFTIVVLFSM QGEQITSQPW DVVRIALPLL AYFALMWGGG YVLGAAIGLG YERTTTLAFT 300
  301 AAGNNFELAI AVAIATYGAT SGQALAGVVG PLIEVPVLVG LVYVSLALRK RFTPTDGKVS 360
  361 AP