YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85677355
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYQCRTLKR KMSTDVGDVL FFLGVGVVGV SGNIFNLIFT VQQQVKTRTI QTVGLILDVI  60
   61 SISNIILALA ILSMVVGIFL NPQIWCIKPY PFDLRLEIYL MLTCGFISFW AIAWLSLFYC 120
  121 IKVVNFSSEI FRTLKKNIST VINTAVLLSC LFSCLFFIPL FSLDTVDSTE QNDNAYGNVT 180
  181 CPMPSFTIQM NQDAYSAAVL FLLCPIPLMI MLPTSVRMVV HLCAHTRALQ KNQTQVQGSD 240
  241 SYLLVCKLTI SLVGVYLFNL FFVSLFILMK LIGAYITYQY LVSTFTFYCG VTSALLTASN 300
  301 RYLKDKLWSL FCCRKAKEPA SKSHTVVTGD V

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.93
Transmembrane Helix	19	40	0.91
Cytoplasmic	41	54	0.85
Transmembrane Helix	55	80	0.84
Non-Cytoplasmic	81	97	0.91
Transmembrane Helix	98	121	0.91
Cytoplasmic	122	139	0.91
Transmembrane Helix	140	161	0.94
Non-Cytoplasmic	162	193	0.96
Transmembrane Helix	194	216	0.87
Cytoplasmic	217	247	0.86
Transmembrane Helix	248	269	0.84
Non-Cytoplasmic	270	275	0.65
Transmembrane Helix	276	299	0.82
Cytoplasmic	300	331	0.94