YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EG12392
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.61
Transmembrane Helix	33	53	0.92
Non-Cytoplasmic	54	99	0.40
Transmembrane Helix	100	122	0.90
Cytoplasmic	123	129	0.60
Transmembrane Helix	130	152	0.86
Non-Cytoplasmic	153	175	0.69
Transmembrane Helix	176	199	0.85
Cytoplasmic	200	209	0.60
Transmembrane Helix	210	233	0.87
Non-Cytoplasmic	234	277	0.68
Transmembrane Helix	278	300	0.87
Cytoplasmic	301	317	0.53
Transmembrane Helix	318	337	0.87
Non-Cytoplasmic	338	345	0.46
Transmembrane Helix	346	368	0.73
Cytoplasmic	369	369	0.36
Transmembrane Helix	370	390	0.70
Non-Cytoplasmic	391	416	0.68
Transmembrane Helix	417	439	0.89
Cytoplasmic	440	559	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKIFSSHVM PFRALIDACW KEKYTAARFT RDLIAGITVG IIAIPLAMAL AIGSGVAPQY  60
   61 GLYTAAVAGI VIALTGGSRF SVSGPTAAFV VILYPVSQQF GLAGLLVATL LSGIFLILMG 120
  121 LARFGRLIEY IPVSVTLGFT SGIGITIGTM QIKDFLGLQM AHVPEHYLQK VGALFMALPT 180
  181 INVGDAAIGI VTLGILVFWP RLGIRLPGHL PALLAGCAVM GIVNLLGGHV ATIGSQFHYV 240
  241 LADGSQGNGI PQLLPQLVLP WDLPNSEFTL TWDSIRTLLP AAFSMAMLGA IESLLCAVVL 300
  301 DGMTGTKHKA NSELVGQGLG NIIAPFFGGI TATAAIARSA ANVRAGATSP ISAVIHSILV 360
  361 ILALLVLAPL LSWLPLSAMA ALLLMVAWNM SEAHKVVDLL RHAPKDDIIV MLLCMSLTVL 420
  421 FDMVIAISVG IVLASLLFMR RIARMTRLAP VVVDVPDDVL VLRVIGPLFF AAAEGLFTDL 480
  481 ESRLEGKRIV ILKWDAVPVL DAGGLDAFQR FVKRLPEGCE LRVCNVEFQP LRTMARAGIQ 540
  541 PIPGRLAFFP NRRAAMADL