YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73996696
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDYLKKWMM GRRCGPGAVG HILISLANTL PLASRPGRPS GRPGGRPGAP PGARGVPVPV  60
   61 LLPLAARLRG VGGPGGLPFC GPSGGAGASG GAGAAAALGP GGTPGPPVRM PPPPPQGLYR 120
  121 SPMPGAAYPR PGMLPGSRMT PQGPSMGPPG YGGNPSVRPG LAQSGMDQSR KRPAPQQIQQ 180
  181 VQQQAVQNRN HNAKKKKMAD KILPQRIREL VPESQAYMDL LAFERKLDQT IMRKRLDIQE 240
  241 ALKRPIKQKR KLRIFISNTF NPAKSDAEDG EGTVASWELR VEGRLLEDSA LSKYDATKQK 300
  301 RKFSSFFKSL VIELDKDLYG PDNHLVEWHR TATTQETDGF QVKRPGDVNV RCTVLLMLDY 360
  361 QPPQFKLDPR LARLLGIHTQ TRPVIIQALW QYIKTHKLQD PHEREFVICD KYLQQIFESQ 420
  421 RMKFSEIPQR LHALLMPPEP IIINHVISVD PNDQKKTACY DIDVEVDDTL KTQMNSFLLS 480
  481 TASQQEIATL DNKIHETIET INQLKTQREF MLSFARDPQG FINDWLQSQC RDLKTMTDVV 540
  541 GNPEEERRAE FYFQPWAQEA VCRYFYSKVQ QRRQELEQAL GIRNT

Type	Start	End	Confidence
Cytoplasmic	1	13	0.71
Transmembrane Helix	14	33	0.72
Non-Cytoplasmic	34	585	0.94