YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73996690
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAVAGALG LLWGWLWSER FWLPQNVSWA DLEGPGDGYG YPRARHILSV FPVAAGIFSV  60
   61 RLLFERFIAK PCALHVGIQD SDPYLAQPNA ILEKVFISIT KYPDEKRLEG LSKQLDWDIR 120
  121 KIQCWFRHRR NQDKPPTLTK FCESMWRFTF YLCIFCYGIK FLWSSPWFWD IRQCWHSYPY 180
  181 QPLTSGLYYY YIMELAFYWS LMFSQFIDIK RKDFLIMFVH HLATIGLITF SYINNMVRVG 240
  241 TLIMCLHDAS DFLLEAAKLA NYAKYQRLCD TLFVIFSAVF VVTRLGIYPF WILNTTFFES 300
  301 WEIIGPYPSW WLFNGLLLIL QFLHVFWSYL IVRIAFKALI RGKVSKDDRS DVESSSEEED 360
  361 MATNMKSPCG SSSSNGANRV NGHMGSSYWA EE

Type	Start	End	Confidence
Cytoplasmic	1	4	0.48
Transmembrane Helix	5	19	0.40
Non-Cytoplasmic	20	43	0.79
Transmembrane Helix	44	64	0.77
Cytoplasmic	65	147	0.90
Transmembrane Helix	148	167	0.89
Non-Cytoplasmic	168	186	0.83
Transmembrane Helix	187	207	0.86
Cytoplasmic	208	213	0.82
Transmembrane Helix	214	233	0.68
Non-Cytoplasmic	234	238	0.51
Transmembrane Helix	239	257	0.55
Cytoplasmic	258	270	0.74
Transmembrane Helix	271	292	0.89
Non-Cytoplasmic	293	309	0.92
Transmembrane Helix	310	331	0.91
Cytoplasmic	332	392	0.95