YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73996656
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	264	0.77
Transmembrane Helix	265	280	0.76
Non-Cytoplasmic	281	293	0.78
Transmembrane Helix	294	317	0.82
Cytoplasmic	318	341	0.86
Transmembrane Helix	342	362	0.80
Non-Cytoplasmic	363	374	0.68
Transmembrane Helix	375	394	0.93
Cytoplasmic	395	403	0.81
Transmembrane Helix	404	423	0.92
Non-Cytoplasmic	424	450	0.87
Transmembrane Helix	451	470	0.89
Cytoplasmic	471	489	0.94
Transmembrane Helix	490	512	0.90
Non-Cytoplasmic	513	565	0.91
Transmembrane Helix	566	587	0.82
Cytoplasmic	588	606	0.89
Transmembrane Helix	607	625	0.95
Non-Cytoplasmic	626	639	0.84
Transmembrane Helix	640	661	0.84
Cytoplasmic	662	668	0.87
Transmembrane Helix	669	692	0.91
Non-Cytoplasmic	693	699	0.82
Transmembrane Helix	700	722	0.92
Cytoplasmic	723	756	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHHRSECFKR SLSNNNDDDD DDKVYKVAFD EAAGNYVWLR GRKEMVLPGW LNSIERSRPS  60
   61 QSSVYGHKRL DCQYVKYGNA RDPANRDVRV RPCRPITGRV GGWRSGVAPG YGAASAGAPR 120
  121 QVAAEPNSDF TTYLIFAQNP EPIVKKTLRP LFSIHGINAD LKIFSMSGIS VNYKTDSQKS 180
  181 SSETYSKKSD TQASTMVLGP EQKMADDDAS GDHGDSPSLG TLNPAYSNSS LPQSTEHSQE 240
  241 PFTTYFDEKI AIPEEEYSCF SFRKLWAFTG PGFLMSIAYL DPGNIESDLQ SGAVAGFKLL 300
  301 WVLLLATIVG LLLQRLAARL GVVTGLHLAE VCHRQYPKVP RIILWLMVEL AIIGSDMQEV 360
  361 IGSAIAINLL SVGRVPLWGG VLITIADTFV FLFLDKYGLR KLEAFFGFLI TIMALTFGYE 420
  421 YVTVKPSQSQ VLKGMFLPSC SGCHTPQIEQ AVGIVGAVIM PHNMYLHSAL VKSRQINRAN 480
  481 KQEVREANKY FFIESCIALF VSFIINVFVV SVFAEAFFEK TNDQVVAVCR NSSSPHSHLF 540
  541 PDDNSTLAVD IYKGGVVLGC YFGPAALYIW AVGILAAGQS STMTGTYSGQ FVMEGFLNLR 600
  601 WSRFARVILT RSIAIIPTLL VAIFQDVEHL TGMNDFLNVL QSLQLPFALI PILTFTSLRP 660
  661 VMNDFANGLG WRIAGGILVL IVCSINMYFV LVYVQELGHV ALYVVAAVVS VAYLSFVFYL 720
  721 GWQCLIALGM SFLDCGHTVS ISKVLLTGEG TGGYTK