YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73996079
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKILSRVWT ASPRTGMWLL ILVAYLFQRN VNSGRLPTKA VDPEAFMNIS EIIRHQGYPC  60
   61 EEYEVVTEDG YILSVNRIPQ GLAQPRDAGP RPVVLLQHGL LGDASNWISN LPNNSLGFIL 120
  121 ADAGFDVWLG NSRGNTWSRK HKTLSIDQDE FWAFSYDEMA RFDLPAVINF ILQKSGQEKI 180
  181 YYVGYSQGTT MGFIAFSTMP ELAQKVKMYF ALAPIATVKY AKSPGTKFLL LPDMMIKGLF 240
  241 GKKEFLYQTR FFRQFAIYLC GQMIIDQICS NVLLLMGGFN TNNMNMSRAN VYVAHTLAGT 300
  301 SVQNILHWSQ AVNSGELRAF DWGSETKNLE KGNQPTPVRY KVRDMTVPTA MWTGGQDWLS 360
  361 NPEDVKALLS EVTNLIYHKN IPEWAHVDFI WGLDAPRRLY SEIIHLMRRD DASLSPGTCA 420
  421 VGHEAEAGKS

Type	Start	End	Confidence
Signal Peptide	1	33	0.79
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	430	0.95