YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73995965
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLLKWESWD TGRWPAERAP SHPRGARRSE AVPDPPGPRT GGGEPSARAQ RHQGPLRAPS  60
   61 RSTEAPPRPA PRPGGRRAPV SPPAMGSAAL EILGLVLCLV GWVGLILACG LPMWQVTAFL 120
  121 DHNIVTAQTT WKGLWMSCVV QSTGHMQCKV YDSVLALSTE VQAARALTVG AVLLALVALF 180
  181 VTLAGAQCTT CVAPGPAKAR VALTGGALYA LCGLLALVPL CWFANIVVRE FYDPTVPMSQ 240
  241 KYELGAALYI GWAASALLMC GGGLVCCGAW VCAGRPDFSF PVKYSAPRRP TATGDYDKKN 300
  301 YV

Type	Start	End	Confidence
Cytoplasmic	1	91	0.96
Transmembrane Helix	92	114	0.86
Non-Cytoplasmic	115	165	0.93
Transmembrane Helix	166	186	0.89
Cytoplasmic	187	204	0.70
Transmembrane Helix	205	226	0.92
Non-Cytoplasmic	227	247	0.90
Transmembrane Helix	248	273	0.88
Cytoplasmic	274	302	0.95