YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73995872
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWDSEWQAG RGFDLRAAVA EGSGNERQLL RIETAGPELR LAGQLRLGKD RLIQASGVRD  60
   61 GLVSVSFTAL LLKPPQAYPG FPGQQPQGPF KVTITCRFFK GALQITPSGG TAPYPTLHSW 120
  121 RYSRQLQLRW HSLWNSGGDR KGGTERPPAQ VDSERAPPLP VSSPPAEAPW PRPQSLWPLA 180
  181 IGSPWRAAKS PAPHWPHLLP RRRGRHHNNR HVLNCGARSL QLELLSPFQL YFNPHLVFRK 240
  241 FQVWRLVTNF LFFGPLGFSF FFNMLFVFRY CRMLEEGSFR GRTADFVFMF LFGGVLMTLL 300
  301 GLLGSLFFLG QALTVMLVYV WSRRNPRVRV NFFGLLTFHA PFLPWALMGF SLLLGNSILV 360
  361 DLLGIAVGHI YYFLEDVFPN QPGGKRLLLT PRFLKLLLDA PQEDPNYLPL PEEQPGPLQQ 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	245	0.51
Transmembrane Helix	246	268	0.88
Non-Cytoplasmic	269	285	0.40
Transmembrane Helix	286	320	0.73
Cytoplasmic	321	329	0.42
Transmembrane Helix	330	350	0.64
Non-Cytoplasmic	351	351	0.28
Transmembrane Helix	352	373	0.64
Cytoplasmic	374	420	0.72