YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73995337
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKHRFSGAM LSEVLLVSAP GKVILHGEHA VVHGKIALAV ALNLRTFLRL QPHSNGKMCL  60
   61 NLPNIGVKRA WDVARLQLQD TSFLEPGNAT GDAAAPTSEQ VEKLKEVAGI PKDGADPECL 120
  121 AVLAFLYLYL SICRKQRTLP SLDITVWSEL PTGAGLGSSA AYSVCLAAAL LTACEAIPNP 180
  181 QNNGESASRW TMEDLELINK WAFQGERMIH GNPSGVDNTI STWGGALRYQ QGKISSIKRL 240
  241 PALKILLTNT KVPRSTKALV ASVRSRLLKF PEIVAPLLTS INAISLECER TLEEMASAPA 300
  301 PEHYLVLEEL IDINQHHLNA LGVGHASLDQ LCQVTMAHGL HSKLTGAGGG GCGITLLRPD 360
  361 LEQPKVEAMK QALTSCGFDC WETRIGAPGI SIHSAASLDT QVQRALDGL

Type	Start	End	Confidence
Signal Peptide	1	21	0.78
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	409	0.98