YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73995165
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMLPSAPPP PPSGFSRQPP SGDLNLAIKA YCLAGPRLAD GLSGGPGRGR GIACVASAGG  60
   61 SGGSGGGGGC ATAWVTTPRA SPSSEELVES VGGSRGAVRR KGAGPGVSTP PPTWAPVVSL 120
  121 GLPLRLGSPP NSWPPMSPQC SYILPLADSS APIFCLQILV SPPPPTPIAS RIPVSLAWRL 180
  181 AAPTPCTLGT SGHSSLLQPP PPDPFFTVFF SRHLLPCRPV ELVCEMAADI SESGGHDCKG 240
  241 DSKGNTKLDA DYPLRVLYCG VCSLPTEYCE YMPDVAKCRQ WLEKNFPNEF AKLTVENSPK 300
  301 QEAGISEGQG TAGEEEEKKK QKRGGRGQIK QKKKTVPQKV TIAKIPRAKK KYVTRVCGLA 360
  361 TFEIDLKEAQ RFFAQKFSCG ASVTGEDEII IQGDFTDDII DVIQEKWPEV DDDSIEDLGE 420
  421 VKK

Type	Start	End	Confidence
Cytoplasmic	1	51	0.53
Transmembrane Helix	52	75	0.48
Non-Cytoplasmic	76	423	0.96