YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73993770
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.99
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	150	0.99
Transmembrane Helix	151	173	0.94
Cytoplasmic	174	183	0.83
Transmembrane Helix	184	205	0.92
Non-Cytoplasmic	206	216	0.91
Transmembrane Helix	217	235	0.92
Cytoplasmic	236	395	0.78
Transmembrane Helix	396	417	0.90
Non-Cytoplasmic	418	422	0.39
Transmembrane Helix	423	443	0.87
Cytoplasmic	444	458	0.47
Transmembrane Helix	459	483	0.84
Non-Cytoplasmic	484	490	0.44

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLHPAAFN CFQLILLSLW SAVPEAHALS TGTPTINAVS FLQDLLHRYG EGDSLTLQQL  60
   61 KALLNHLDVG VGRDNVTHTL HGQRNLSTCF SSGDLFAAHN LSNQSRIGRN EFQEFCPTIL 120
  121 QQLDSRACSS ENQENEEDEQ IEEGKPSAIE VWGYGLLCVT VISLCSLMGA SVVPFMKKTF 180
  181 YKRLLLYFIA LAIGTLYSNA LFQLIPEAFG FNPLEDYYVS KSAVVFGGFY LFFFTEKILK 240
  241 MLLKQKNEHH HGHSHYASET LPSKKDQEEG VTEKLQNGDL DHMIPQHCSS ELDGKAPVMD 300
  301 EKVIVGSLSV QDLQASQSAC YWLKGVRYSD IGTLAWMITL SDGLHNFIDG LAIGASFTVS 360
  361 VFQGISTSVA ILCEEFPHEL GDFVILLNAG MSIQQALFFN FLSACCCYVG LAFGILAGSH 420
  421 FSANWIFALA GGMFLYIALA DMFPEMNEVC QEDERNGSVL IPFVIQNLGL LTGFTIMLLL 480
  481 TMYSGQIQIG