YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73991918
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVKFSSGYY DFSVKVEGDN RYIANSVELR VKISTEVGIT NVDLSTVDKD QSIAPKTTRV  60
   61 TYPAKAKGTF IADSHQNFAL FFQLVDVNTG AELTPHQTFV RLHNQKTGQE VVFVAEPDSK 120
  121 NVYKFELDTS ERKIEFDSAS GTYTLYLIIG DATLKNPILW NVADVVIKFP EEDAPSTVLS 180
  181 KNLFTPKQEI QHLFREPEKR PPTVVSNTFT ALILSPLLLL FALWIRIGAN VSNFTFAPST 240
  241 IIFHLGHAAM LGLMYVYWTQ LNMFQTLKYL AILGSVTFLA GNRMLAQQAI KRTAH

Type	Start	End	Confidence
Non-Cytoplasmic	1	203	0.64
Transmembrane Helix	204	227	0.86
Cytoplasmic	228	235	0.52
Transmembrane Helix	236	258	0.85
Non-Cytoplasmic	259	265	0.57
Transmembrane Helix	266	286	0.83
Cytoplasmic	287	295	0.74