YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73990449
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.98
Transmembrane Helix	76	99	0.87
Non-Cytoplasmic	100	110	0.88
Transmembrane Helix	111	135	0.79
Cytoplasmic	136	143	0.88
Transmembrane Helix	144	162	0.73
Non-Cytoplasmic	163	176	0.65
Transmembrane Helix	177	198	0.67
Cytoplasmic	199	213	0.57
Transmembrane Helix	214	236	0.56
Non-Cytoplasmic	237	260	0.75
Transmembrane Helix	261	279	0.93
Cytoplasmic	280	303	0.80
Transmembrane Helix	304	326	0.83
Non-Cytoplasmic	327	346	0.76
Transmembrane Helix	347	366	0.90
Cytoplasmic	367	380	0.69
Transmembrane Helix	381	400	0.85
Non-Cytoplasmic	401	409	0.74
Transmembrane Helix	410	432	0.86
Cytoplasmic	433	444	0.68
Transmembrane Helix	445	462	0.75
Non-Cytoplasmic	463	510	0.89
Transmembrane Helix	511	530	0.93
Cytoplasmic	531	551	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPTVSHKDN SRQRRPGAFN HSPDMKSGPL PPGGWEDRPQ EAAGGEGDKE ALLVRDAGPG  60
   61 ELPRPPRGCR AELSSILLLL FLYVLQGIPL GLAGSIPLIL QSKNVSYTDQ AFFSLVFWPF 120
  121 SLKLLWAPLV DAVYLRSFGR RKSWLVPTQY TLGLFMIYLS GQVERLLGGA GGRGPDVTAL 180
  181 TVTFFLFEFL AATQDIAVDG WALTMLSREN VGYASTCNSV GQTAGYFLGN VLFLALESAD 240
  241 FCNKYLRFEP QPRGIVTLSD FLFFWGAVFL ITTTLVALLK KENKEVSVGK EETQGITDTY 300
  301 KLLFAIIKMP AVLTFCLLIL TAKIGFSAAD AVTGLKLVEE GVPKEHLALL AVPMVPLQII 360
  361 LPLIISKYTA GPQPLNIFYK AMPYRLLFGL EYALLVWWTP RVEHQGGFPI YYYIIVLLSY 420
  421 ALHQVTLYSM YVSIMAFNAK VSDPLIGGTY MTLLNTVSNL GGNWPSTVAL WLVDPLTVKE 480
  481 CVGASNQNCR TPDAVELCKK LGGSCVTALD GYYVESIICV FIGFAWWFVL GPKLKKLQDK 540
  541 GPSSWKCKRS N