YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73990377
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPSIISVVD SKALKKDWSE KCKSTEKKMI CNINFRPVGI EACQNRPGER ASEGPLDPVY  60
   61 PRTSSALLKV AQMITLLIAF ICVNRSMWTS YAYSYFEVVT ICNLIMILVF YLVHLFRLYR 120
  121 MLTCISWPLS ELLHYLIGTL LLLIASIVAA SKSYSQSGLV AGAIFGFVAT FLCLASIWMS 180
  181 YKISCVTQST ARSIAGDPLC SHGQAGPSKE RLRNRRFAQK QTGPAAGSPG PRFLPNAVPG 240
  241 SPAGRRSPLA SPGPARTCPR RPRFAVRVDL RVQAGNPWWL REQPYPGAAL EDGSGGQSTV 300
  301 QGV

Type	Start	End	Confidence
Cytoplasmic	1	67	0.95
Transmembrane Helix	68	88	0.86
Non-Cytoplasmic	89	94	0.73
Transmembrane Helix	95	116	0.90
Cytoplasmic	117	131	0.85
Transmembrane Helix	132	151	0.94
Non-Cytoplasmic	152	158	0.78
Transmembrane Helix	159	181	0.90
Cytoplasmic	182	303	0.96