YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73989439
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	34	0.93
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	299	0.99
Transmembrane Helix	300	322	0.91
Cytoplasmic	323	363	0.95
Transmembrane Helix	364	387	0.91
Non-Cytoplasmic	388	395	0.79
Transmembrane Helix	396	418	0.91
Cytoplasmic	419	432	0.86
Transmembrane Helix	433	455	0.89
Non-Cytoplasmic	456	467	0.77
Transmembrane Helix	468	492	0.86
Cytoplasmic	493	519	0.95
Transmembrane Helix	520	541	0.90
Non-Cytoplasmic	542	554	0.76
Transmembrane Helix	555	578	0.91
Cytoplasmic	579	588	0.82
Transmembrane Helix	589	611	0.88
Non-Cytoplasmic	612	627	0.89
Transmembrane Helix	628	652	0.89
Cytoplasmic	653	662	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARLLVLSP PRWPGLVLLL LLLRAAPGPR PGAAFYLPGL APVNFCEEDK KSDECKAEIE  60
   61 LFVNRLDSVE SVLPYEYTAF DFCQASEGKR PSENLGQVLF GERIEPSPYK FTFNKEETCK 120
  121 LVCTKTYHTE KAEDKQKLEF LKKSMLLNYQ HHWIVDNMPV TWCYDVEDGQ RFCNPGFPIG 180
  181 CYITDKGHAK DACVINSEFH ERDTFYIFNH VDIKIYYHVV ETGSMGARLV AAKLEPKSFK 240
  241 HTHIDKPDCS GPPMDISNKA SGEIKIAYTY SVSFQEDKNI RWASRWDYIL ESMPHTHIQW 300
  301 FSIMNSLVIV LFLSGMVAMI MLRTLHKDIA RYNQMDSTED AQEEFGWKLV HGDIFRPPRK 360
  361 GMLLSVFLGS GTQILIMTFV TLFFACLGFL SPANRGALMT CAVVLWVLLG TPAGYVAARF 420
  421 YKSFGGEKWK TNVLLTSFLC PGIVFADFFI MNLILWGEGS SAAIPFGTLV AILALWFCIS 480
  481 VPLTFIGAYF GFKKNAIEHP VRTNQIPRQI PEQSFYTKPL PGIIMGGILP FGCIFIQLFF 540
  541 ILNSIWSHQM YYMFGFLFLV FIILVITCSE ATILLCYFHL CAEDYHWQWR SFLTSGFTAV 600
  601 YFLIYAIHYF FSKLQITGTA STILYFGYTM IMVLIFFLFT GTIGFFACFW FVTKIYSVVK 660
  661 VD