YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73989388
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSGARGALG LRRAVGDAEV SAAAAGATGS EAARPGDSGG RNRGGRRAAA ATTSSTGVDE  60
   61 GAERREDSPA RKPDPEPGRM DHHQPGTGRY QVLHNEEDNS ESSALEQSST SNPTPQIIQT 120
  121 TPSASVLETE SSPPPYSSIT VEVPTTSDSE VYSEFYPVPP PYSVATSLPT YDEAEKAKAA 180
  181 AMAAAAAETA QRIQEEECQP RDDFSDADQL RVGNDGIFML AFFMAFIFNW LGFCLSFCIT 240
  241 NTIAGRYGAI CGFGLSLIKW ILIVRFSDYF TGYFNGQYWL WWIFLVLGLL LFFRGFVNYL 300
  301 KVRNMSESMA AAHRTRYFFL L

Type	Start	End	Confidence
Non-Cytoplasmic	1	216	0.88
Transmembrane Helix	217	237	0.91
Cytoplasmic	238	242	0.72
Transmembrane Helix	243	263	0.86
Non-Cytoplasmic	264	277	0.85
Transmembrane Helix	278	298	0.93
Cytoplasmic	299	321	0.93