YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73989332
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPVTNTRPT SPKRHAPLRN NSPLQKRFWA TAPERLFRGA EASGEGPAGV KSRRLRNHGC  60
   61 AGRGGGAVTE SAWSHDRARA RRLSPPPSQR ALRPLSVSAP SCDALRGCSL APRDGSSVGA 120
  121 SLEASPLGGG GGGAAPKLGG SGSHSNSDFF FFFFLGMAAA AAGPATASKF SRSFSDALME 180
  181 EDPRAALEEL TKALEQKPDD AQYYCQRAYC HILLGNYCDA VADAKKSLEL NPNNSIAMLR 240
  241 KGICEYHEKN YAAALETFIE GQKLDSADPD FTVWIKKCQE AQNGSQSEVS DSQRTHQSKI 300
  301 KYDWYQTESQ VIITLMIKNV QKNNVNVEFS EKELSALVKL PSGEDYNLKL RLLHPIIPEQ 360
  361 STFKVLSTKI EIKMKKTEAV RWEKLEGQGD VPKPKQFIAD VKNLYPSSSH YTRNWDKLVG 420
  421 EIKEEEKNEK LEGDAALNKL FQQIYSDGSD EVKRAMNKSF MESGGTVLST NWSDVGKRKV 480
  481 EINPPDDMEW KKY

Type	Start	End	Confidence
Cytoplasmic	1	148	0.78
Transmembrane Helix	149	167	0.81
Non-Cytoplasmic	168	493	0.92