YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73989245
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.40
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFASTGSSGL YKAPLSKSLL LVPSALSLLL ALLLPHCQRF FVYDLQAVKE DLQIWRLICG  60
   61 RIICLDLKDT FCSSLLIYNF RIFERRYGSR KFASFLLGSW VLSALVDLIL VEAMWYFFGI 120
  121 ATAGNLPSGF LAPVFALFVP FYCSIPRIQV AQILGPLSIT NKTLIYILGL QLFTSGSYIW 180
  181 IVAISGLISG ICYNSKVFQL QQVLCIPRWM AKFFSWTLEP IFSSPEPTTE ARIGMGATVD 240
  241 IQRQQRMELL DRQLMLSQFA QVRRQRQQPS EGGMINWNRL FPPLRQRRNI NYQDGRQSEQ 300
  301 QASPPLEVSE EQVARLMEMG FSRGDALEAL RASNNDLNVA TNFLLQH

Type	Start	End	Confidence
Signal Peptide	1	39	0.40
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	57	0.58
Transmembrane Helix	58	72	0.36
Cytoplasmic	73	91	0.62
Transmembrane Helix	92	116	0.81
Non-Cytoplasmic	117	122	0.56
Transmembrane Helix	123	145	0.81
Cytoplasmic	146	163	0.61
Transmembrane Helix	164	193	0.74
Non-Cytoplasmic	194	347	0.66