YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73987895
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAADREGY WGPTTSTLDW CEENYAVTWY IAEFWNTVSN LIMIIPPIFG AIQSVRDGLE  60
   61 KRYIASYLAL TVVGMGSWCF HMTLKYEMQL LDELPMIYSC CIFVYCMFEC FKMKNSVNYH 120
  121 LLFILVLFSL IVTTVYLKVK EPIFHQVMYG MLVFTLVLRS IYIVTWVYPW LRGLGYTSLG 180
  181 IFLLGFLLWN IDNIFCDSLR NFRKKMPPII GVATQFHAWW HILTGLGSYL HILFSLYTRT 240
  241 LYLRYRPKVK FLFGIWPVIL FEPLRKH

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.65
Transmembrane Helix	34	52	0.73
Cytoplasmic	53	62	0.77
Transmembrane Helix	63	84	0.91
Non-Cytoplasmic	85	93	0.68
Transmembrane Helix	94	111	0.80
Cytoplasmic	112	116	0.75
Transmembrane Helix	117	137	0.92
Non-Cytoplasmic	138	144	0.62
Transmembrane Helix	145	163	0.93
Cytoplasmic	164	172	0.55
Transmembrane Helix	173	191	0.91
Non-Cytoplasmic	192	216	0.78
Transmembrane Helix	217	238	0.89
Cytoplasmic	239	267	0.72