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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73987521
Protein type: Transmembrane
Type Confidence: 0.47
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLPLCFFA PALDPAMRPR SWLLRRAPSR GGPWLLCGRV ELHWKPGGEL WAARASPRLG  60
   61 GPVSPRGGWH GGPPPASPRV MGSEVQGLGA EPAGIPRSQL PLLLGLLPFH DKHHDAAHEI 120
  121 IETIRWVCEE IPDLKLAMEN YVLIDYDTKS FESMQRLCDK YNRAIDSIHQ LWKGTTQPMK 180
  181 LNTRPSNGLL RHILQQVYNH SVTDPEKLNN YEPFSPEVYG ETSFDLVAQM IDEIKMTEDD 240
  241 LFVDLGSGVG QVVLQVAAAT NCKHHYGVEK ADIPAKYAET MDREFRKWMK WYGKKHAEYT 300
  301 LERGDFLSEE WRERIANTSV IFVNNFAFGP EVDHQLKERF ANMKEGGRIV SSKPFAPLNF 360
  361 RINSRNLSDI GTIMRVVELS PLKGSVSWTG KPVSYYLHTI DRTILENYFS SLKNPKLREE 420
  421 QEAARRRQQR ENKSNTTTPT KVPENKAAVP ADTPMDSGAE EEKAGATTIK KPSPSKARKK 480
  481 KLNKKGRKMA GRKRGRPKKM STANPERKPK KSQTALDLLH AQAASQTAAP SPQDAYKSPH 540
  541 SPFYQLPPSV QRHPPDQLLL APTPPALQKL LESFKIQYLQ FLAYTKTAQY KASLQQLLDQ 600
  601 EKEKNARLLG AAQQLFGHCQ AQKEEIKRLF QQKLDELGVK ALTYNDLIQA QKEISAHNQQ 660
  661 LREQTEQLQK DNRELRSQSL QLLKARCEEL KLDWSTLSLE NLLKEKQALR SQISEKQRHC 720
  721 LELQISIVEL EKSQRQQELL QLKSCVPPDE ALSAHLRGKG ALGRELEADP SRLHLDLDCS 780
  781 KFSLPHFSSA SPELSMNGHA ANYELCSALS RPSSKQNTPQ YLASPLDQEV VPCTPSHSSR 840
  841 SRLEKMSGLA LPDYTRLSPA KLVLRRHLSQ DHATSGKPAA SELHPRAEHT KENGLPYQSP 900
  901 GIANGIKLSP QDPRPSSPVA LQMTGERGSE KGLKERAYAS SGEAITSLPV SIPLSTVQPS 960
  961 KLPVSIPLAS VVLPSRAEKV RSTPSPVPQT RESSSTLEKQ MGTNTHSAGS KSLASTPAGF1020
 1021 YTGSVAVSGA LAGSPAPLAP GAEPSAFDEV SGSGSLFASM GSCSSTPQHP PLLPQSRGSG1080
 1081 AASPAHPLCA SPRLSSVAQG PLPDANKGDL PSEAGFSDPE GEAKRRIVFT ISAGGSSAKQ1140
 1141 SPPSKPSPLP TGARGDSSQG HGSDSRKRGR RKRASAGTPS LSSGVSPKRR ALPSVAGLFT1200
 1201 QSSGSPLNLN SMVSNINQPL EITAISSPES LKSSPVPYQD NDQPPILKKE KPLSQTNGAH1260
 1261 YSPLTSDEEQ GSEDEPGSAR IERKIATISL ESKSPPKTLE SGGGLAGRKP TPASEPTNSS1320
 1321 KWKSTFSPIS DLGLAKCADS PLQAGSALSQ NSLFTFRPPL DDPGSADTKL AAHPRKSFPG1380
 1381 ALSGAGGLSP SSNPPNGFAF GGGLAADLSL HSFSDGASLS HKVPEAASLG APLSFPAPRG1440
 1441 KEGGATEPGT FVNKRQLDGL GGPKGREAGE LGLPVCGPPD KASLTHSKPT KGRDREPDLK1500
 1501 NGHNLFISAA TVPPAGLLSG PGLATVASSA VSAAPSAQTH RPFLGTFAPG PQFALGPMSL1560
 1561 QANLGSSVLQ SLFSSVPAAA GLVHVSSAAT RLTNSHAMGS FSSGVAGGAV GGVFNHAVPS1620
 1621 ASAHPFGASF GSGAACRSAT LSLTPLQAVA SAPASSFQAP PPPPPGQPAL PAPPPPNAAL1680
 1681 PPAPALLPAN YEPVLLQNLA SLPANQAFLP ASSAASLQPA NASLSIKLAS LPHKAPRPSF1740
 1741 TVHHQPLPGL ALAQAAPVIP QASSTGPSAV WVSLGMPPPY AARLAGVKPR 

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