YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73987186
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAREGIAGFL NFGIFGLRWG HLPAVWETFP DAWEPELMPP MWSSLNEWFW QDRFWLPPNN  60
   61 TWAVLEDRDG LVFAHPRDLL AALPLALALV VMRFTFERFV GLPLSRLLGV RDQARKPVKP 120
  121 NATLEKYFLT KGWKPKEPQM ALLAAQCGLT LQQTQRWFRR RRNQDRPCLT KKFCEASWRF 180
  181 SFYACAFFGG LSILYHESWL WMPEMCWDNY PLQPLKPALY YWYLLELSFY ISLLMTLPFD 240
  241 VRRKDFKEQV AHHFVTIILI SFSYSSNLLR IGSLVLLLHD ASDYLLEAGK MFNYTPWRKV 300
  301 CDTLFIVFSL VFFYTRLVLF PTRILYTTYY DSIAQWDTFF GYYFCNTLLM ALQLLHVFWS 360
  361 CLILRMIYSF VKKGRMEKDV RSDVEESDSS DGEVAQEHLL LKNGAAHRPG AAPADGPRSR 420
  421 LVGRVANGHT ATT

Type	Start	End	Confidence
Cytoplasmic	1	6	0.88
Transmembrane Helix	7	25	0.81
Non-Cytoplasmic	26	78	0.86
Transmembrane Helix	79	96	0.89
Cytoplasmic	97	179	0.93
Transmembrane Helix	180	199	0.92
Non-Cytoplasmic	200	218	0.94
Transmembrane Helix	219	239	0.92
Cytoplasmic	240	299	0.66
Transmembrane Helix	300	320	0.77
Non-Cytoplasmic	321	339	0.72
Transmembrane Helix	340	368	0.75
Cytoplasmic	369	433	0.84