YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73987082
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPRNQTSAS EFILLGLSEN PEQETLLFAL FLCMYVVTVV GNLLIILAIS SDSYLHTPMY  60
   61 FFLANLSLVD FCLATDTVPK MLVNIQIRSK SISYACCLTQ MYFFHFFGIM DSVLIAVMAY 120
  121 DRFVAICHPL HYTTIMSPRL CGLLAGGPWV FSCFISLTHI LLMARLVFCG SNELPHYFCD 180
  181 LTPLLRLSCT DTSVNKIFVL IVAGMVIATP FICILASYAR IIVAIMKVPS AGGRKKAFST 240
  241 CSSHLSVVAL FYGTTIGVYL CPSSVRTAVK EKASAVMYTA VTPMLNPFIY SLRNRDLKGA 300
  301 LRKLVNRKQI GSFLVQNPFS SQQILMEFIF WACYRLNHRS QSGPGNRRRG PSQPHPASEG 360
  361 LGCWGTFDTQ QIAATCPLGP GEGLLVMSVG SAPGLQQGTQ CLKNSRCSLK AYRWIKDIDE 420
  421 QIQAWYIGRL WRYKVYIELK RKLQGVLETG RAGKNSVCGR QWGASWITRH VSKASEAMSQ 480
  481 VQSRKATLAE ENSPRTTRQV EAVSNVVVKD GFLGRLKRAS VWGDCN

Type	Start	End	Confidence
Cytoplasmic	1	25	0.78
Transmembrane Helix	26	49	0.91
Non-Cytoplasmic	50	100	0.55
Transmembrane Helix	101	124	0.76
Cytoplasmic	125	139	0.66
Transmembrane Helix	140	162	0.87
Non-Cytoplasmic	163	196	0.81
Transmembrane Helix	197	222	0.85
Cytoplasmic	223	239	0.80
Transmembrane Helix	240	260	0.86
Non-Cytoplasmic	261	526	0.67